Plot soil profiles below a dendrogram

plotProfileDendrogram(
  x,
  clust,
  rotateToProfileID = FALSE,
  scaling.factor = 0.01,
  width = 0.1,
  y.offset = 0.1,
  dend.y.scale = max(clust$height * 2, na.rm = TRUE),
  dend.color = par("fg"),
  dend.width = 1,
  dend.type = c("phylogram", "cladogram"),
  debug = FALSE,
  ...
)

Arguments

x: a SoilProfileCollection object
clust: a hierarchical clustering object generated by hclust, cluster::agnes, or cluster::diana
rotateToProfileID: logical, attempt rotation of dendrogram according to original profile IDs, requires dendExtend package
scaling.factor: vertical scaling of the profile heights (may have to tinker with this)
width: scaling of profile widths
y.offset: vertical offset for top of profiles
dend.y.scale: extent of y-axis (may have to tinker with this)
dend.color: dendrogram line color
dend.width: dendrogram line width
dend.type: dendrogram type, passed to plot.phylo(), either "phylogram" or "cladogram"
debug: logical,optionally print debugging data
...: additional arguments to plotSPC

Value

a data.frame of IDs and linking structure

Details

This function places soil profile sketches below a dendrogram.

Note

You may have to tinker with some of the arguments to get optimal arrangement and scaling of soil profiles.

Author

D.E. Beaudette