Estimate boundaries of the particle size control section (U.S Soil Taxonomy; 12th edition)

Source: R/estimatePSCS.R

Estimates the upper and lower boundary of the particle size control section by applying a programmatic version of the particle size control section key from the Keys to Soil Taxonomy (12th edition).

estimatePSCS(
  p,
  hzdesgn = hzdesgnname(p, required = TRUE),
  clay.attr = hzmetaname(p, "clay", required = TRUE),
  texcl.attr = hztexclname(p, required = TRUE),
  tax_order_field = "tax_order",
  bottom.pattern = "Cr|R|Cd",
  simplify = TRUE,
  ...
)

Arguments

p

A SoilProfileCollection

hzdesgn

Name of the horizon attribute containing the horizon designation. Default 'hzname'

clay.attr

Name of the horizon attribute containing clay contents. Default 'clay'

texcl.attr

Name of the horizon attribute containing textural class (used for finding sandy textures). Default 'texcl'

tax_order_field

Name of the site attribute containing taxonomic order; for handling PSCS rules for Andisols in lieu of lab data. May be NA or column missing altogether, in which case Andisol PSC possibility is ignored.

bottom.pattern

Regular expression pattern to match a root-restrictive contact. Default matches Cr, R or Cd. This argument is passed to both estimateSoilDepth and getArgillicBounds.

simplify

Return a length 2 vector with upper and lower boundary when p has length 1? Default TRUE.

...

additional arguments are passed to getArgillicBounds()

Value

A numeric vector (when simplify=TRUE) containing the top and bottom depth of the particle size control section. First value is top, second value is bottom. If p contains more than one profile, the result is a data.frame with profile ID plus PSCS top and bottom depths.

Details

Requires information to identify argillic horizons (clay contents, horizon designations) with getArgillicBounds() as well as the presence of plow layers and surface organic soil material. Any getArgillicBounds() arguments may be passed to estimatePSCS.

Requires information on taxonomic order (to handle andisols).

WARNING: Soils in arenic or grossarenic subgroups, with fragipans, or with strongly contrasting PSCs may not be classified correctly. The author would welcome a dataset to develop this functionality for.

References

Soil Survey Staff. 2014. Keys to Soil Taxonomy, 12th ed. USDA-Natural Resources Conservation Service, Washington, DC.

See also

getArgillicBounds, getSurfaceHorizonDepth

Author

Andrew Gene Brown

Examples


data(sp1, package = 'aqp')
depths(sp1) <- id ~ top + bottom
site(sp1) <- ~ group

# set required metadata
hzdesgnname(sp1) <- 'name'
hztexclname(sp1) <- 'texture'
hzmetaname(sp1, 'clay') <- 'prop'

x <- estimatePSCS(sp1)
x
#>     id pscs_top pscs_bottom
#> 1 P001       49          89
#> 2 P002       30          59
#> 3 P003        2          52
#> 4 P004       32          62
#> 5 P005        5          55
#> 6 P006       31         106
#> 7 P007       25         100
#> 8 P008       27         102
#> 9 P009       28         103