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Get vegetation plot data from local NASIS database

Source: R/fetchVegdata.R, R/get_vegplot_data_from_NASIS_db.R
fetchVegdata.Rd

Convenience function for loading most commonly used Vegetation Plot information from local NASIS database.

Usage

fetchVegdata(
  SS = TRUE,
  include_pedon = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_from_NASIS_db(SS = TRUE, stringsAsFactors = NULL, dsn = NULL)

get_vegplot_location_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_trhi_from_NASIS_db(SS = TRUE, stringsAsFactors = NULL, dsn = NULL)

get_vegplot_species_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transect_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transpecies_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transpoints_from_NASIS_db(SS = TRUE, dsn = NULL)

get_vegplot_prodquadrats_from_NASIS_db(SS = TRUE, dsn = NULL)

get_vegplot_groundsurface_from_NASIS_db(SS = TRUE, dsn = NULL)

get_vegplot_tree_si_summary_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_speciesbasalarea_from_NASIS(SS = TRUE, dsn = NULL)

get_vegplot_tree_si_details_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_textnote_from_NASIS_db(
  SS = TRUE,
  fixLineEndings = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

Arguments

SS

fetch data from the currently loaded selected set in NASIS or from the entire local database (default: TRUE)

include_pedon

Include pedon and transect data joined to site? (default: TRUE). If include_pedon is set to "assocuserpedonid" only pedon records that are linked through the Associated User Pedon ID column will have their peiid reported in the vegplot table.

stringsAsFactors

deprecated

dsn

Optional: path to local SQLite database containing NASIS table structure; default: NULL

fixLineEndings

Replace '\r\n' with '\n'; Default: TRUE

Value

fetchVegdata(): A named list containing: "vegplot", "vegplotlocation", "vegplotrhi", "vegplotspecies", "vegtransect", "vegtransplantsum", 'vegsiteindexsum', "vegsiteindexdet", "vegbasalarea", and "vegplottext" tables

get_vegplot_location_from_NASIS_db(): a data.frame containing location data from the corresponding record in the site table

get_vegplot_trhi_from_NASIS_db(): a data.frame containing Rangeland Health Indicator (RHI) data from the vegplot table

get_vegplot_species_from_NASIS_db(): a data.frame containing Plot Plant Inventory data

get_vegplot_transect_from_NASIS_db(): a data.frame containing Vegetation Transect data

get_vegplot_transect_from_NASIS_db(): a data.frame containing Vegetation Transect Plant Summary data

get_vegplot_transpoints_from_NASIS_db(): a data.frame containing Vegetation Transect Point Plant Cover Details

get_vegplot_prodquadrats_from_NASIS_db(): a data.frame containing Vegetation Transect Production Quadrat data

get_vegplot_groundsurface_from_NASIS_db(): a data.frame containing summary data for line point intercept ground surface cover hits by cover type.

get_vegplot_tree_si_summary_from_NASIS_db(): a data.frame containing Vegetation Plot Tree Site Index Summary data

get_vegplot_speciesbasalarea_from_NASIS(): a data.frame containing Vegetation Plot Species Basal Area and Trees Counted data

get_vegplot_tree_si_details_from_NASIS_db(): a data.frame containing Vegetation Plot Tree Site Index Details data

get_vegplot_textnote_from_NASIS_db(): a data.frame containing Vegetation Plot text notes

Examples

if (FALSE) { # local_NASIS_defined()
# \donttest{
vsurf <- get_vegplot_groundsurface_from_NASIS_db()
# }
}