Plot a soil relationship diagram using a chord diagram.

plotSoilRelationChordGraph(m, s, mult = 2, base.color = "grey", 
highlight.colors = c("RoyalBlue", "DarkOrange", "DarkGreen"), 
add.legend = TRUE, ...)

Arguments

m

an adjacency matrix, no NA allowed

s

soil of interest, must exist in the column or row names of m

mult

multiplier used to re-scale data in m associated with s

base.color

color for all soils other than s and 1st and 2nd most commonly co-occuring

highlight.colors

vector of 3 colors: soil of interest, 1st most common, 2nd most common

add.legend

logical, add a legend

...

additional arguments passed to circlize::chordDiagramFromMatrix

Details

This function is experimental. Documentation pending. See http://jokergoo.github.io/circlize/ for ideas.

References

https://github.com/jokergoo/circlize

Author

D.E. Beaudette

See also

Examples

# \donttest{ data(amador) m <- component.adj.matrix(amador) plotSoilRelationChordGraph(m, 'amador')
#> Loading required namespace: circlize
#> Note: The second link end is drawn out of sector 'pentz'.
# }